Index _ | A | B | C | D | E | F | G | I | K | L | N | O | P | R | S | U | V | X _ __init__() (SpaceTravLR.astronomer.Astronaut method) (SpaceTravLR.beta.Betabase method) (SpaceTravLR.gene_factory.GeneFactory method) (SpaceTravLR.models.parallel_estimators.SpatialCellularProgramsEstimator method) (SpaceTravLR.oracles.OracleQueue method) (SpaceTravLR.oracles.SpaceTravLR method) (SpaceTravLR.spaceship.SpaceShip method) (SpaceTravLR.visionary.CyberBoss method) (SpaceTravLR.visionary.Visionary method) A add_orphan() (SpaceTravLR.oracles.OracleQueue method) age (SpaceTravLR.oracles.OracleQueue property) agents (SpaceTravLR.oracles.OracleQueue property) Astronaut (class in SpaceTravLR.astronomer) B Betabase (class in SpaceTravLR.beta) betadata (SpaceTravLR.models.parallel_estimators.SpatialCellularProgramsEstimator property) C check_LR_properties() (SpaceTravLR.models.parallel_estimators.SpatialCellularProgramsEstimator static method) clean_up_adata() (in module SpaceTravLR.tools.utils) collect_interactions() (SpaceTravLR.beta.Betabase method) completed_genes (SpaceTravLR.oracles.OracleQueue property) compute_all_derivatives() (in module SpaceTravLR.beta) compute_betas() (SpaceTravLR.gene_factory.GeneFactory method) (SpaceTravLR.visionary.CyberBoss method) (SpaceTravLR.visionary.Visionary method) connectivity_to_weights() (in module SpaceTravLR.tools.utils) convolve_by_sparse_weights() (in module SpaceTravLR.tools.utils) create_lock() (SpaceTravLR.oracles.OracleQueue method) create_spatial_features() (in module SpaceTravLR.models.parallel_estimators) CyberBoss (class in SpaceTravLR.visionary) D delete_lock() (SpaceTravLR.oracles.OracleQueue method) E expand_paired_interactions() (in module SpaceTravLR.tools.network) export() (SpaceTravLR.models.parallel_estimators.SpatialCellularProgramsEstimator method) extract_gene_name() (SpaceTravLR.oracles.OracleQueue static method) F fit() (SpaceTravLR.models.parallel_estimators.SpatialCellularProgramsEstimator method) (SpaceTravLR.spaceship.SpaceShip method) from_json() (SpaceTravLR.gene_factory.GeneFactory class method) G gaussian_kernel_2d() (in module SpaceTravLR.tools.utils) GeneFactory (class in SpaceTravLR.gene_factory) genome_screen() (SpaceTravLR.gene_factory.GeneFactory method) get_betas() (SpaceTravLR.models.parallel_estimators.SpatialCellularProgramsEstimator method) get_cellchat_db() (in module SpaceTravLR.tools.network) get_filtered_df() (in module SpaceTravLR.models.parallel_estimators) get_ko_data() (SpaceTravLR.gene_factory.GeneFactory static method) get_nichenet_links_() (SpaceTravLR.spaceship.SpaceShip method) I imbue_adata_with_space() (SpaceTravLR.oracles.SpaceTravLR static method) init_data() (SpaceTravLR.models.parallel_estimators.SpatialCellularProgramsEstimator method) init_received_ligands() (in module SpaceTravLR.models.parallel_estimators) interactive_select() (SpaceTravLR.spaceship.SpaceShip method) is_empty (SpaceTravLR.oracles.OracleQueue property) is_everything_ok() (SpaceTravLR.spaceship.SpaceShip method) is_mouse_data() (in module SpaceTravLR.tools.utils) K kill_old_locks() (SpaceTravLR.oracles.OracleQueue method) knn_distance_matrix() (in module SpaceTravLR.tools.utils) L last_refresh_age() (SpaceTravLR.oracles.OracleQueue method) ligand_regulators_interactions() (SpaceTravLR.models.parallel_estimators.SpatialCellularProgramsEstimator static method) ligands_receptors_interactions() (SpaceTravLR.models.parallel_estimators.SpatialCellularProgramsEstimator static method) load() (SpaceTravLR.models.parallel_estimators.SpatialCellularProgramsEstimator method) load_base_cell_thresholds() (SpaceTravLR.spaceship.SpaceShip method) load_base_GRN() (SpaceTravLR.spaceship.SpaceShip static method) load_betadata() (SpaceTravLR.beta.Betabase method) (SpaceTravLR.gene_factory.GeneFactory static method) (SpaceTravLR.visionary.Visionary static method) load_betas() (SpaceTravLR.gene_factory.GeneFactory method) load_betas_from_disk() (SpaceTravLR.beta.Betabase method) N num_orphans (SpaceTravLR.oracles.OracleQueue property) O OracleQueue (class in SpaceTravLR.oracles) P perturb() (SpaceTravLR.gene_factory.GeneFactory method) (SpaceTravLR.spaceship.SpaceShip method) perturb_batch() (SpaceTravLR.gene_factory.GeneFactory method) plot_modulators() (SpaceTravLR.models.parallel_estimators.SpatialCellularProgramsEstimator method) possible_targets (SpaceTravLR.gene_factory.GeneFactory property) process_adata_() (SpaceTravLR.spaceship.SpaceShip method) R received_ligands() (in module SpaceTravLR.models.parallel_estimators) reformat() (SpaceTravLR.visionary.CyberBoss method) (SpaceTravLR.visionary.Visionary method) regulated_genes (SpaceTravLR.oracles.OracleQueue property) remaining_genes (SpaceTravLR.oracles.OracleQueue property) run() (SpaceTravLR.astronomer.Astronaut method) (SpaceTravLR.oracles.SpaceTravLR method) run_celloracle_() (SpaceTravLR.spaceship.SpaceShip method) run_commot_() (SpaceTravLR.spaceship.SpaceShip method) run_spacetravlr() (SpaceTravLR.spaceship.SpaceShip method) S setup_() (SpaceTravLR.spaceship.SpaceShip method) setup_perturbations() (SpaceTravLR.spaceship.SpaceShip method) SpaceShip (class in SpaceTravLR.spaceship) SpaceTravLR (class in SpaceTravLR.oracles) SpatialCellularProgramsEstimator (class in SpaceTravLR.models.parallel_estimators) spawn_worker() (SpaceTravLR.spaceship.SpaceShip method) splash_betas() (SpaceTravLR.gene_factory.GeneFactory method) (SpaceTravLR.visionary.Visionary method) U update_status() (SpaceTravLR.gene_factory.GeneFactory method) V Visionary (class in SpaceTravLR.visionary) X xyc2spatial_fast() (in module SpaceTravLR.models.spatial_map)